SST Educational Workshop
Data Stewardship
November 17, 2023
Hello! 👋
Lars
Environmental Engineer
Open Science Specialist at ETH Zurich
RStudio certified instructor for Data Science with R
Data Stewardship
The Vision?
An active community that applies FAIR principles (Wilkinson et al. 2016) to data generated in the greater sector of the Swiss Society of Toxicology.
- Findable
- Accessible
- Interoperable
- Reusable
A set of technical principles that can be applied to data.
The Opportunity
Journal Articles
Screenshot from Greene et al. (2021)
hands up
Who has published a scientific article in a journal?
hands up
Who has published data as supplemental material?
Journal Articles
Screenshot from Greene et al. (2021)
Journal Articles
Screenshot from Greene et al. (2021)
PDF reports
Screenshot from Soeters, Mukheibir, and Willetts (2021)
PDF reports
Screenshot from Soeters, Mukheibir, and Willetts (2021)
PDF reports
Screenshot from Soeters, Mukheibir, and Willetts (2021)
hands up
Who has published data, separate from an article/report, and assigned a unique DOI?
hands up
Who has an ORCID iD
(account on: https://orcid.org/)
Our RDM workflow at GHE
Publisher policies
The Challenge
(Technical) Overhead
- Data management workflows
- Tools for scientific computing (R, Python)
- Version control system (Git)
- Project management tools (GitHub, GitLab)
- Communication (Slack, Element)
- Authoring (RMarkdown, Jupyter, Quarto)
- Publishing (Zenodo, Figshare, OSF)
The Start
Funding - ETH ORD Program
Open Research Data Program of the ETH Board: https://ethrat.ch/en/eth-domain/open-research-data/
ORD 1st Explore (150k), our funded proposal: https://openwashdata.org/pages/gallery/proposal/
ORD 2nd Contribute (30k), our funded proposal: https://github.com/openwashdata-dev/proposal-eth-ord-scheme-contribute/blob/main/proposal-eth-ord-scheme-contribute.md
ORD 2nd Explore (150k) guidelines, due 29th February 2024: https://ethrat.ch/wp-content/uploads/2023/10/Application-Guidelines_TrackA_Explore_2nd_call_FINAL.pdf
ORD 6th Contribute (30k) guidelines, due 12th December 2023: https://ethrat.ch/wp-content/uploads/2023/10/Application-guidelines_TrackC-Contribute-projects-6th-call-FINAL.pdf
Funding - ETH ORD Program
We draw your attention to the fact that the Contribute calls are suitable for young researchers (PhD and postdoc) who would like to add value to their data within their projects.
Open Science Working Group Email (2023-10-05)
Learning - Open Science Tools
A job at Roche?
careers.roche.com: FAIR Data Expert
Thanks 🌻
Slides created via revealjs and Quarto: https://quarto.org/docs/presentations/revealjs/
Access slides as PDF on GitHub
This material is licensed under Creative Commons Attribution 4.0 International.
References
Greene, Nicola, Sarah Hennessy, Tate W. Rogers, Jocelyn Tsai, and Francis L. de los Reyes III. 2021. “The Role of Emptying Services in Provision of Safely Managed Sanitation: A Classification and Quantification of the Needs of LMICs.” Journal of Environmental Management 290 (July): 112612. https://doi.org/10.1016/j.jenvman.2021.112612.
Soeters, S, P Mukheibir, and J Willetts. 2021. “Treatment Technologies in Practice: On-the-Ground Experiences of Faecal Sludge and Wastewater Treatment.”
Wilkinson, Mark D., Michel Dumontier, IJsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, et al. 2016. “The FAIR Guiding Principles for Scientific Data Management and Stewardship.” Scientific Data 3 (1): 160018. https://doi.org/10.1038/sdata.2016.18.
SST Educational Workshop Data Stewardship Lars Schöbitz lschoebitz@ethz.ch Global Health Engineering - ETH Zurich November 17, 2023